Year: 2014 | Month: July | Volume 7 | Special Issue
Genetic diversity and molecular analysis among cotton genotypes by EST-SSR markers.
Abstract:
Objective of this research work is to utilize EST- SSR markers for fibre quality traits to generate genetic diversity between tetraploid (Gossypium hirsutum) and diploid (Gossypium herbaceum and Gossypium arboreum) cotton species at molecular level. Twenty four (24) genotypes of cotton and thirty five (35) EST SSR primers for different fibre quality traits (fibre length, Lint percentage, Boll weight and fibre strength) were taken for this study. Almost all primers reveals amplification in both diploid and tetraploid cotton species which indicates that flanking primer sequences are conserved in both genomes of cotton. Thirty one (31) EST SSR primers generate good and enormous amplicon and produced a total of four hundred seventy eight (478) sharp, similar and variable bands in all genotypes. Average number of bands amplified by each primer was 15.419. Statistical analysis for EST SSR data was conducted using software programme NTSYS pc version 2.02e and GeneAlEx. The genetic distance (GD) among the all genotypes of cotton were also analyzed and it is ranged from 0.05 to 0.71 which indicates significant diversity between all the genotypes of both tetraploid and diploid cotton species. The average observed mean heterozygosity was 0.60 and observed mean percentage of polymorphic loci was 60%.
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